空间代谢组学在肾脏疾病中的研究进展
Research progress of spatial metabolomics in kidney diseases
肾脏疾病的发病率和病死率较高,但早期一般没有明显的临床症状,通常发现时,肾脏已遭受严重损害。目前,对肾脏疾病早期诊断标志物的研究主要依赖于基因组学、蛋白质组学、转录组学和其他方法,但这些方法都不能保留时间和空间信息。代谢组学在识别潜在疾病机制、促进临床诊断和开发肾脏疾病药物治疗方面显示出越来越大的潜力。作为组学工具包的最新成员,空间代谢组学脱颖而出。该方法对新鲜组织标本进行原位质谱分析,同时能有效保存其时空信息。该文全面综述了空间代谢组学在肾脏疾病研究中的进展,包括对糖尿病肾病发生、发展的理解,对肾细胞癌和正常组织的鉴别诊断等。
Kidney diseases pose a major global health burden with high incidence and mortality. Early stages often lack symptoms, leading to significant damage before detection. Current research on early diagnostic biomarkers relies on genomics, proteomics, and transcriptomics, but these methods lack spatial and temporal information. Metabolomics shows increasing potential for identifying disease mechanisms, aiding diagnosis, and developing treatments for kidney diseases. Spatial metabolomics, the latest addition to the omics toolkit, enables in situ mass spectrometry analysis of fresh tissue, preserving spatial and temporal information. This review summarizes the progress of spatial metabolomics in kidney disease research, including understanding diabetic nephropathy pathogenesis and differentiating renal cell carcinoma from normal tissue.
| [1] |
Anon. Kidney disease: a global health priority[J]. Nat Rev Nephrol, 2024, 20(7): 421-423. |
| [2] |
WANG X Q, HU Y Y, ZHU W T, et al. Investigation of metabolite alterations in the kidneys of methionine-choline-deficient mouse by mass spectrometry imaging[J]. Anal Bioanal Chem, 2024, 416(4): 1011-1022. |
| [3] |
李宗霖, 卢强, 李远伟. 尿液代谢组学在前列腺癌中的应用研究进展[J]. 中国现代医学杂志, 2024, 34(8): 40-44. |
| [4] |
RAGI N, SHARMA K. Deliverables from metabolomics in kidney disease: adenine, new insights, and implication for clinical decision-making[J]. Am J Nephrol, 2024, 55(4): 421-438. |
| [5] |
殷志斌, 黄文洁, 伍欣宙, 空间分辨代谢组学进展和挑战[J]. 生物技术通报, 2021, 37(1): 32-51. |
| [6] |
UNSIHUAY D, MESA SANCHEZ D, LASKIN J. Quantitative mass spectrometry imaging of biological systems[J]. Annu Rev Phys Chem, 2021, 72: 307-329. |
| [7] |
黄彦昌, 边澈, 杨燕云, 质谱成像技术在中药材质量鉴定和生物合成途径研究进展[J]. 中华中医药学刊, 2025, 43(5): 124-128. |
| [8] |
GUO S, LI K N, CHEN Y W, et al. Unraveling the drug distribution in brain enabled by MALDI MS imaging with laser-assisted chemical transfer[J]. Acta Pharm Sin B, 2022, 12(4): 2120-2126. |
| [9] |
WANG T, LEE H K, YUE G G L, et al. A novel binary matrix consisting of graphene oxide and caffeic acid for the analysis of scutellarin and its metabolites in mouse kidney by MALDI imaging[J]. Analyst, 2021, 146(1): 289-295. |
| [10] |
KOMPAUER M, HEILES S, SPENGLER B. Atmospheric pressure MALDI mass spectrometry imaging of tissues and cells at 1.4-μm lateral resolution[J]. Nat Methods, 2017, 14(1): 90-96. |
| [11] |
CHAN Y H, PATHMASIRI K C, PIERRE-JACQUES D, et al. Gel-assisted mass spectrometry imaging enables sub-micrometer spatial lipidomics[J]. Nat Commun, 2024, 15(1): 5036. |
| [12] |
WISEMAN J M, IFA D R, VENTER A, et al. Ambient molecular imaging by desorption electrospray ionization mass spectrometry[J]. Nat Protoc, 2008, 3(3): 517-524. |
| [13] |
EBERLIN L S, FERREIRA C R, DILL A L, et al. Desorption electrospray ionization mass spectrometry for lipid characterization and biological tissue imaging[J]. Biochim Biophys Acta, 2011, 1811(11): 946-960. |
| [14] |
LILLJA J, LANEKOFF I. Silver-doped nano-DESI MSI for increased specificity and sensitivity of alkenes[J]. Methods Mol Biol, 2022, 2437: 241-249. |
| [15] |
COSTA C, de JESUS J, NIKULA C, et al. A multimodal desorption electrospray ionisation workflow enabling visualisation of lipids and biologically relevant elements in a single tissue section[J]. Metabolites, 2023, 13(2): 262. |
| [16] |
YIN R C, BURNUM-JOHNSON K E, SUN X F, et al. High spatial resolution imaging of biological tissues using nanospray desorption electrospray ionization mass spectrometry[J]. Nat Protoc, 2019, 14(12): 3445-3470. |
| [17] |
CHEN H, DURAND S, BAWA O, et al. Biomarker identification in liver cancers using desorption electrospray ionization mass spectrometry (DESI-MS) imaging: an approach for spatially resolved metabolomics[J]. Methods Mol Biol, 2024, 2769: 199-209. |
| [18] |
EL-ACHKAR T M, EADON M T, KRETZLER M, et al. Precision medicine in nephrology: an integrative framework of multidimensional data in the kidney precision medicine project[J]. Am J Kidney Dis, 2024, 83(3): 402-410. |
| [19] |
NEUMANN E K, MIGAS L G, ALLEN J L, et al. Spatial metabolomics of the human kidney using MALDI trapped ion mobility imaging mass spectrometry[J]. Anal Chem, 2020, 92(19): 13084-13091. |
| [20] |
LI H K, HUMPHREYS B D. Spatially resolved metabolomic dataset of distinct human kidney anatomic regions[J]. Data Brief, 2024, 54: 110431. |
| [21] |
WANG G Q, HEIJS B, KOSTIDIS S, et al. Analyzing cell-type-specific dynamics of metabolism in kidney repair[J]. Nat Metab, 2022, 4(9): 1109-1118. |
| [22] |
ISLAM M M, RAHMAN M F, ISLAM A, et al. Elucidating Gender-Specific distribution of imipramine, chloroquine, and their metabolites in mice kidney tissues through AP-MALDI-MSI[J]. Int J Mol Sci, 2024, 25(9): 4840. |
| [23] |
JUNG J W, LEE M S, CHOI H J, et al. Mass spectrometric imaging of metabolites in kidney tissues from rats treated with furosemide[J]. Am J Physiol Renal Physiol, 2016, 310(11): F1317-F1327. |
| [24] |
江海燕, 高杉杉, 李婕, 基于质谱成像技术探究5-羟甲基糠醛肾毒性作用机制[J]. 中国药物警戒, 2022, 19(2): 142-147. |
| [25] |
ZHANG G S, ZHANG J L, DEHOOG R J, et al. DESI-MSI and METASPACE indicates lipid abnormalities and altered mitochondrial membrane components in diabetic renal proximal tubules[J]. Metabolomics, 2020, 16(1): 11. |
| [26] |
HARKIN C, SMITH K W, MACKAY C L, et al. Spatial localization of β-unsaturated aldehyde markers in murine diabetic kidney tissue by mass spectrometry imaging[J]. Anal Bioanal Chem, 2022, 414(22): 6657-6670. |
| [27] |
SHARMA K, ZHANG G S, HANSEN J, et al. Endogenous adenine mediates kidney injury in diabetic models and predicts diabetic kidney disease in patients[J]. J Clin Invest, 2023, 133(20): e170341. |
| [28] |
WANG Z H, FU W Q, HUO M L, et al. Spatial-resolved metabolomics reveals tissue-specific metabolic reprogramming in diabetic nephropathy by using mass spectrometry imaging[J]. Acta Pharm Sin B, 2021, 11(11): 3665-3677. |
| [29] |
ZHANG X, LIU Y H, YANG S, et al. Comparison of local metabolic changes in diabetic rodent kidneys using mass spectrometry imaging[J]. Metabolites, 2023, 13(3): 324. |
| [30] |
ZHANG J L, LI S Q, LIN J Q, et al. Mass spectrometry imaging enables discrimination of renal oncocytoma from renal cell cancer subtypes and normal kidney tissues[J]. Cancer Res, 2020, 80(4): 689-698. |
| [31] |
ERLMEIER F, SUN N, SHEN J, et al. MALDI mass spectrometry imaging-prognostic pathways and metabolites for renal cell carcinomas[J]. Cancers (Basel), 2022, 14(7): 1763. |
| [32] |
PRADE V M, SUN N, SHEN J, et al. The synergism of spatial metabolomics and morphometry improves machine learning-based renal tumour subtype classification[J]. Clin Transl Med, 2022, 12(2): e666. |
| [33] |
TAMURA K, HORIKAWA M, SATO S, et al. Discovery of lipid biomarkers correlated with disease progression in clear cell renal cell carcinoma using desorption electrospray ionization imaging mass spectrometry[J]. Oncotarget, 2019, 10(18): 1688-1703. |
| [34] |
WANG Q, SUN N, MEIXNER R, et al. Metabolic heterogeneity in adrenocortical carcinoma impacts patient outcomes[J]. JCI Insight, 2023, 8(16): e167007. |
| [35] |
LIU H H, LI W, HE Q, et al. Mass spectrometry imaging of kidney tissue sections of rat subjected to unilateral ureteral obstruction[J]. Sci Rep, 2017, 7: 41954. |
| [36] |
VEEREN B, BRINGART M, TURPIN C, et al. Caffeic acid, one of the major phenolic acids of the medicinal plant antirhea borbonica, reduces renal tubulointerstitial fibrosis[J]. Biomedicines, 2021, 9(4): 358. |
| [37] |
XU B, LI W Y, ZHANG Y M, et al. Untargeted and spatial-resolved metabolomics characterize serum and tissue-specific metabolic reprogramming in acute kidney injury[J]. Heliyon, 2023, 9(11): e21171. |
| [38] |
RAO S, WALTERS K B, WILSON L, et al. Early lipid changes in acute kidney injury using SWATH lipidomics coupled with MALDI tissue imaging[J]. Am J Physiol Renal Physiol, 2016, 310(10): F1136-F1147. |
| [39] |
李丹丹, 韦春冕, 谢准, 三七根茎对缺血再灌注诱发的急性肾损伤的保护作用[J]. 时珍国医国药, 2024, 35(8): 1814-1817. |
| [40] |
SUN C L, MA S S, LI L L, et al. Visualizing the distributions and spatiotemporal changes of metabolites in Panax notoginseng by MALDI mass spectrometry imaging[J]. J Ginseng Res, 2021, 45(6): 726-733. |
国家自然科学基金(82205008)
浙江省卫生厅项目(2023RC242)
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